Package: ezmmek 0.2.4

ezmmek: Easy Michaelis-Menten Enzyme Kinetics

Serves as a platform for published fluorometric enzyme assay protocols. 'ezmmek' calibrates, calculates, and plots enzyme activities as they relate to the transformation of synthetic substrates. At present, 'ezmmek' implements two common protocols found in the literature, and is modular to accommodate additional protocols. Here, these protocols are referred to as the In-Sample Calibration (Hoppe, 1983; <doi:10.3354/meps011299>) and In-Buffer Calibration (German et al., 2011; <doi:10.1016/j.soilbio.2011.03.017>). protocols. By containing multiple protocols, 'ezmmek' aims to stimulate discussion about how to best optimize fluorometric enzyme assays. A standardized approach would make studies more comparable and reproducible.

Authors:Christopher Cook [aut, cre], Andrew Steen [aut]

ezmmek_0.2.4.tar.gz
ezmmek_0.2.4.zip(r-4.5)ezmmek_0.2.4.zip(r-4.4)ezmmek_0.2.4.zip(r-4.3)
ezmmek_0.2.4.tgz(r-4.4-any)ezmmek_0.2.4.tgz(r-4.3-any)
ezmmek_0.2.4.tar.gz(r-4.5-noble)ezmmek_0.2.4.tar.gz(r-4.4-noble)
ezmmek_0.2.4.tgz(r-4.4-emscripten)ezmmek_0.2.4.tgz(r-4.3-emscripten)
ezmmek.pdf |ezmmek.html
ezmmek/json (API)

# Install 'ezmmek' in R:
install.packages('ezmmek', repos = c('https://ccook.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4 exports 0.00 score 40 dependencies 11 scripts 253 downloads

Last updated 4 years agofrom:cb7a920724. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-winOKSep 14 2024
R-4.5-linuxOKSep 14 2024
R-4.4-winOKSep 14 2024
R-4.4-macOKSep 14 2024
R-4.3-winOKSep 14 2024
R-4.3-macOKSep 14 2024

Exports:new_ezmmek_act_calibratenew_ezmmek_act_groupnew_ezmmek_sat_fitnew_ezmmek_std_group

Dependencies:assertableclicolorspacecpp11data.tabledplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmenls2pillarpkgconfigprotopurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

ezmmek tutorial

Rendered fromezmmek_vignette.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2020-08-28
Started: 2020-08-28

Readme and manuals

Help Manual

Help pageTopics
ezmmek_calc_mm_fitezmmek_calc_mm_fit
ezmmek_calc_std_lm_homoezmmek_calc_std_lm_buffer
ezmmek_calc_std_lm_homoezmmek_calc_std_lm_homo
ezmmek_calc_std_lm_homo_bufferezmmek_calc_std_lm_homo_buffer
ezmmek_calibrate_activitiesezmmek_calibrate_activities
ezmmek_std_lmezmmek_std_lm
new_ezmmek_act_calibratenew_ezmmek_act_calibrate
new_ezmmek_act_groupnew_ezmmek_act_group
new_ezmmek_sat_fitnew_ezmmek_sat_fit
new_ezmmek_std_groupnew_ezmmek_std_group
plot_new_ezmmek_act_groupplot.new_ezmmek_act_group
plot_new_ezmmek_calibrateplot.new_ezmmek_calibrate
plot_new_ezmmek_sat_fitplot.new_ezmmek_sat_fit
plot_new_ezmmek_std_groupplot.new_ezmmek_std_group